Introduction to ChIP-seq analysis: Glossary

ChIP-seq data analysis involves alignment, peak calling and downstream analysis, the latter of which depends on the specific question the researcher aims to address.

MACS2 is an easy to use peak caller with a range of different options that can be provided.

Motif discovery is not a simple problem and there exist many different techniques to solve the problem.

It is best to take an ensemble approach and to take the results that occur more than once